UPM Institutional Repository

RNA sequencing of kidney and liver transcriptome obtained from wild cynomolgus macaque (Macaca fascicularis) originating from Peninsular Malaysia


Citation

Uli, Joey Ee and Yong, Christina Seok Yien and Yeap, Swee Keong and Alitheen, Noorjahan Banu and Rovie-Ryan, Jeffrine J. and Tan, Jeffrine J. and Mat Isa, Nurulfiza and Soon, Guan Tan (2018) RNA sequencing of kidney and liver transcriptome obtained from wild cynomolgus macaque (Macaca fascicularis) originating from Peninsular Malaysia. BMC Research Notes, 11 (1). art. no. 923. pp. 1-6. ISSN 1756-0500

Abstract

Objective: Using high-throughput RNA sequencing technology, this study aimed to sequence the transcriptome of kidney and liver tissues harvested from Peninsular Malaysia cynomolgus macaque (Macaca fascicularis). M. fascicularis are significant nonhuman primate models in the biomedical field, owing to the macaque's biological similarities with humans. The additional transcriptomic dataset will supplement the previously described Peninsular Malaysia M. fascicularis transcriptomes obtained in a past endeavour. Results: A total of 75,350,240 sequence reads were obtained via Hi-seq 2500 sequencing technology. A total of 5473 significant differentially expressed genes were called. Gene ontology functional categorisation showed that cellular process, catalytic activity, and cell part categories had the highest number of expressed genes, while the metabolic pathways category possessed the highest number of expressed genes in the KEGG pathway analysis. The additional sequence dataset will further enrich existing M. fascicularis transcriptome assemblies, and provide a dataset for further downstream studies.


Download File

[img] Text (Abstract)
RNA.pdf

Download (5kB)

Additional Metadata

Item Type: Article
Divisions: Faculty of Biotechnology and Biomolecular Sciences
Faculty of Science
DOI Number: https://doi.org/10.1186/s13104-018-4014-1
Publisher: BioMed Central
Keywords: Macaca fascicularis; Cynomolgus macaque; RNA sequencing; Transcriptome; Biomedical science; Kidney; Liver
Depositing User: Ms. Nida Hidayati Ghazali
Date Deposited: 17 Jul 2021 23:34
Last Modified: 17 Jul 2021 23:34
Altmetrics: http://www.altmetric.com/details.php?domain=psasir.upm.edu.my&doi=10.1186/s13104-018-4014-1
URI: http://psasir.upm.edu.my/id/eprint/73812
Statistic Details: View Download Statistic

Actions (login required)

View Item View Item