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Assessment of Avicennia species using leaf morphology and nuclear ribosomal internal transcribed spacer DNA barcode


Citation

Syazana, Jeffry and Harah, Zakaria Muta and Shiamala, Ramaiya Devi and Yuzine, Esa and Sidik, Bujang Japar (2025) Assessment of Avicennia species using leaf morphology and nuclear ribosomal internal transcribed spacer DNA barcode. Pertanika Journal of Tropical Agricultural Science, 48 (3). pp. 879-910. ISSN 1511-3701; eISSN: 2231-8542

Abstract

The mangrove genus Avicennia, found in tropical and temperate regions, plays a crucial role in providing critical services such as habitat, shoreline stabilisation, and carbon sequestration. Given their ecological and economic significance, expanding knowledge by revising species recognition is essential for validating morphological characteristics and overlapping traits. This study reassessed Avicennia species using morphological and genetic analysis. Samples were collected from Pulau Bagan Pinang, Pulau Burong, Pulau Kamat, Pulau Merambong, and Sungai Kemasik, Peninsular Malaysia. Mature leaves were assessed for their morphological traits, whereas young leaves were used to extract DNA for internal transcribed spacer (ITS) sequences. Statistical and phylogenetic analyses were conducted to evaluate leaf morphology variations and genetic divergence. Leaf morphology and size (p < 0.05) varied significantly among Avicennia species across study sites. Avicennia alba and A. rumphiana from the islands exhibited shorter, narrower, and thicker leaves than Sungai Kemasik. Avicennia marina displayed consistent leaf sizes. Leaf hierarchical relationships showed three to four phenetic groups, with separations at Euclidean distances of 25.0 (length), 18.0 (width), and 25.0 (thickness). Phylogenetics of Avicennia revealed four clades with strong bootstrap supports (83-100%). The guanine-cytosine (%GC) content was consistent, ranging from 63.5% to 64.6%. Avicennia rumphiana displayed high intraspecific genetic variation (1.57%) and distinctness from other species, supported by morphological and genetic data. This integrated approach is crucial for species identification and effective biodiversity assessments.


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Additional Metadata

Item Type: Article
Divisions: Faculty of Agriculture
Faculty of Agricultural and Forestry Sciences
International Institute of Aquaculture and Aquatic Science
DOI Number: https://doi.org/10.47836/pjtas.48.3.13
Publisher: Universiti Putra Malaysia
Keywords: Avicennia; Genetic; Internal transcribed spacer (its); Leaf morphology; Leaf morphometric; Mangroves
Depositing User: MS. HADIZAH NORDIN
Date Deposited: 15 Oct 2025 03:18
Last Modified: 15 Oct 2025 03:18
Altmetrics: http://www.altmetric.com/details.php?domain=psasir.upm.edu.my&doi=10.47836/pjtas.48.3.13
URI: http://psasir.upm.edu.my/id/eprint/120900
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