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Morphological and genetic identification of Halophila species and a new distribution record of Halophila nipponica at the Tanjung Adang Laut shoal, Johor, Malaysia


Citation

Che Alias, Muhammad Afif and Zakaria, Muta Harah and Ramaiya, Shiamala Devi and Esa, Yuzine and Ab. Ghani, Nurul Izza and Bujang, Japar Sidik (2024) Morphological and genetic identification of Halophila species and a new distribution record of Halophila nipponica at the Tanjung Adang Laut shoal, Johor, Malaysia. PLoS ONE, 19 (10 October). art. no. e0309143. ISSN eISSN: 1932-6203

Abstract

The Halophila species exhibit complex characteristics due to their high degree of variation across different bioregions. This study delves into the intricate characteristics of Halophila species in the Tanjung Adang Laut shoal, Johor, Malaysia, and offers valuable insights through morphological and genetic evidence. Employing internal transcribed sequences (ITS), we investigated the phylogeny of Halophila species, revealing distinct clades for H. ovalis, H. major, H. spinulosa, and the newly recorded H. nipponica. Notably, H. nipponica from the Tanjung Adang Laut shoal formed a conspecific relationship with its counterparts from Japan and Korea (98.3-98.5% similarity; 5-11 bp differences). Morphologically, distinguishing features, including the ratio of the half-lamina width (1:4.76-6.13 mm) and crossvein count (4-7 pairs), supported the identification of H. nipponica. Genetic distance analyses revealed differences between H. nipponica, H. ovalis, and H. major, indicating haplotype diversity. Geographical variations were evident, as H. nipponica presented unique haplotypes (H24) in its clade. The 47 haplotypes network identified significant mutation sites, providing a comprehensive understanding of genetic and morphological distinctions. In conclusion, this study highlights the intricate characteristics and phylogeny of Halophila species in the Tanjung Adang Laut shoal, Johor, and provides valuable insights into their genetic and morphological diversity.


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Additional Metadata

Item Type: Article
Divisions: Faculty of Agriculture
Faculty of Science
Faculty of Agricultural and Forestry Sciences
International Institute of Aquaculture and Aquatic Science
DOI Number: https://doi.org/10.1371/journal.pone.0309143
Publisher: Public Library of Science
Keywords: Halophila species; Tanjung adang laut shoal; Johor; Malaysia; Halophila nipponica; New distribution record; Morphological identification; Genetic identification; Internal transcribed sequences (its); Phylogeny; H. ovalis; H. major; H. spinulosa; Conspecific relationship; Half-lamina width ratio; Crossvein count; Genetic distance; Haplotype diversity; Geographical variations; Haplotypes network; Mutation sites
Depositing User: Ms. Azian Edawati Zakaria
Date Deposited: 30 Sep 2025 02:00
Last Modified: 05 Oct 2025 18:13
Altmetrics: http://www.altmetric.com/details.php?domain=psasir.upm.edu.my&doi=10.1371/journal.pone.0309143
URI: http://psasir.upm.edu.my/id/eprint/120298
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