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Identification of ethnomedicinally important Kaempferia L. (Zingiberaceae) species based on morphological traits and suitable DNA region


Citation

Labrooy, Catherine Dharshini and Abdullah, Thohirah Lee and Stanslas, Johnson (2018) Identification of ethnomedicinally important Kaempferia L. (Zingiberaceae) species based on morphological traits and suitable DNA region. Current Plant Biology, 14. 50 - 55. ISSN 2214-6628

Abstract

Nuclear ribosomal internal transcribed spacer (ITS) sequences and morphological characteristics were used to identify medicinally important Kaempferia species cultivated in Peninsular Malaysia. Six species were evaluated for parameters such as nucleotide diversity (0.458) and estimated values of transition/transversion bias (0.89) using sequence data. Maximum parsimony (MP) analysis inferred divergence pattern in the Kaempferia genus. The resulting phylogenetic tree was compared to one formed using morphological traits. Morphological and molecular data both show 3 distinctive groupings within selected Kaempferia species. ITS 4 and 5 sequences are proposed as DNA barcodes for identification of Kaempferia species. In terms of morphological traits, plant habit, rhizome colour and leaf variation can be used for preliminary identification of this genus.


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Additional Metadata

Item Type: Article
Divisions: Faculty of Agriculture
Faculty of Medicine and Health Science
Institute of Bioscience
DOI Number: https://doi.org/10.1016/j.cpb.2018.09.004
Publisher: Elsevier
Keywords: DNA barcode; ITS4; ITS5; Maximum parsimony; Dendrogram
Depositing User: Mr. Sazali Mohamad
Date Deposited: 26 Feb 2020 09:33
Last Modified: 26 Feb 2020 09:33
Altmetrics: http://www.altmetric.com/details.php?domain=psair.upmedu.my&doi= 10.1016/j.cpb.2018.09.00417957/IJAB/15.0696
URI: http://psasir.upm.edu.my/id/eprint/74539
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