Citation
Yaakob, Nor Suhaila and Abdullah, Hasdianty and Mohamad, Rosfarizan and Ibrahim, Abdul Latif and Ariff, Arbakariya
(2014)
3D protein structure prediction of Rhodococcus UKMP-5M phenol hydroxylase using homology modelling.
Bioremediation Science & Technology Research, 2 (1).
pp. 1-4.
ISSN 2289-5892
Abstract
The Swiss-prot data-base was used for the protein sequence of Rhodococcus UKMP-5M. BlastP was used to determine the suitable template for homology modelling. Swiss Model is the homology modelling software was used to determine the 3D structure which passed the ProQ quality test for further analysis. Validation result for the predicted structure of Rhodococcus UKMP-5M, in which the prediction structure has passed the validation test with 5.951 Lgscore. This is lies in the range of extremely good model and 0.514 MaxSub which is lies in the range of very good model.
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Additional Metadata
| Item Type: | Article |
|---|---|
| Divisions: | Faculty of Biotechnology and Biomolecular Sciences |
| Publisher: | Hibiscus Publisher |
| Keywords: | Rhodococcus UKMP-5M; Phenol hydroxylase; BlastP; 3D structure; ProQ |
| Depositing User: | Nabilah Mustapa |
| Date Deposited: | 08 Jun 2018 00:58 |
| Last Modified: | 08 Jun 2018 00:58 |
| URI: | http://psasir.upm.edu.my/id/eprint/64042 |
| Statistic Details: | View Download Statistic |
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