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In silico protein prediction of the 16S ribosomal RNA gene from novel rhizobacterium Bacillus cereus UPMLH24

Abdul Aziz, Zakry Fitri and Mohd Saud, Halimi and Abdul Rahim, Khairuddin and Ahmed, Osumanu Haruna (2014) In silico protein prediction of the 16S ribosomal RNA gene from novel rhizobacterium Bacillus cereus UPMLH24. Journal of Pure and Applied Microbiology, 8 (4). pp. 2801-2816. ISSN 0973-7510

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Abstract

In this study, computational methods were used to predict information hidden in the small subunit 16S rRNA gene from newly isolated plant growth-promoting rhizobacteria B. cereus strain UPMLH24. In the present study, the computational methods employed revealed that the small subunit 16S rRNA gene sequence from B. cereus strain UPMLH24 contained a number of small open reading frames that encoded several functional proteins. Computational predictions classified seven phyla of organisms associated with small open reading frames of novel B. cereus strain UPMLH24. The data generated from computational predictions in the present study could form the basis for further research to advance new hypotheses in the microbiology of rhizobacteria.

Item Type:Article
Keyword:Bioinformatics; Gene prediction; Open reading frames; Protein; Rhizobacteria; Translation
Faculty or Institute:Faculty of Agriculture
Faculty of Agriculture and Food Sciences
Publisher:Oriental Scientific Publishing Company
ID Code:37994
Deposited By: Nabilah Mustapa
Deposited On:29 Dec 2015 16:56
Last Modified:29 Dec 2015 16:56

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